[permissions] Remove raw queries and restrict its usage (#12360)

Closes https://github.com/twentyhq/core-team-issues/issues/748

In the frame of the work on permissions we

- remove all raw queries possible to use repositories instead
- forbid usage workspaceDataSource.executeRawQueries()
- restrict usage of workspaceDataSource.query() to force developers to
pass on shouldBypassPermissionChecks to use it.

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Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>

packages/twenty-server/src/engine/object-metadata-repository/metadata-to-repository.mapping.ts

@@ -1,9 +1,7 @@
 import { BlocklistRepository } from 'src/modules/blocklist/repositories/blocklist.repository';
 import { TimelineActivityRepository } from 'src/modules/timeline/repositiories/timeline-activity.repository';
-import { WorkspaceMemberRepository } from 'src/modules/workspace-member/repositories/workspace-member.repository';
 
 export const metadataToRepositoryMapping = {
   BlocklistWorkspaceEntity: BlocklistRepository,
   TimelineActivityWorkspaceEntity: TimelineActivityRepository,
-  WorkspaceMemberWorkspaceEntity: WorkspaceMemberRepository,
 };