[permissions] Remove raw queries and restrict its usage (#12360)

Closes https://github.com/twentyhq/core-team-issues/issues/748

In the frame of the work on permissions we

- remove all raw queries possible to use repositories instead
- forbid usage workspaceDataSource.executeRawQueries()
- restrict usage of workspaceDataSource.query() to force developers to
pass on shouldBypassPermissionChecks to use it.

---------

Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>

packages/twenty-server/src/modules/messaging/common/query-hooks/messaging-query-hook.module.ts

@@ -1,15 +1,11 @@
 import { Module } from '@nestjs/common';
 
-import { ObjectMetadataRepositoryModule } from 'src/engine/object-metadata-repository/object-metadata-repository.module';
 import { ApplyMessagesVisibilityRestrictionsService } from 'src/modules/messaging/common/query-hooks/message/apply-messages-visibility-restrictions.service';
 import { MessageFindManyPostQueryHook } from 'src/modules/messaging/common/query-hooks/message/message-find-many.post-query.hook';
 import { MessageFindOnePostQueryHook } from 'src/modules/messaging/common/query-hooks/message/message-find-one.post-query.hook';
-import { WorkspaceMemberWorkspaceEntity } from 'src/modules/workspace-member/standard-objects/workspace-member.workspace-entity';
 
 @Module({
-  imports: [
-    ObjectMetadataRepositoryModule.forFeature([WorkspaceMemberWorkspaceEntity]),
-  ],
+  imports: [],
   providers: [
     ApplyMessagesVisibilityRestrictionsService,
     MessageFindOnePostQueryHook,