[permissions] Remove raw queries and restrict its usage (#12360)

Closes https://github.com/twentyhq/core-team-issues/issues/748

In the frame of the work on permissions we

- remove all raw queries possible to use repositories instead
- forbid usage workspaceDataSource.executeRawQueries()
- restrict usage of workspaceDataSource.query() to force developers to
pass on shouldBypassPermissionChecks to use it.

---------

Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>

packages/twenty-server/src/modules/timeline/timeline-activity.module.ts

@@ -1,16 +1,16 @@
 import { Module } from '@nestjs/common';
 
 import { ObjectMetadataRepositoryModule } from 'src/engine/object-metadata-repository/object-metadata-repository.module';
-import { WorkspaceDataSourceModule } from 'src/engine/workspace-datasource/workspace-datasource.module';
+import { TwentyORMModule } from 'src/engine/twenty-orm/twenty-orm.module';
 import { TimelineActivityService } from 'src/modules/timeline/services/timeline-activity.service';
 import { TimelineActivityWorkspaceEntity } from 'src/modules/timeline/standard-objects/timeline-activity.workspace-entity';
 
 @Module({
   imports: [
-    WorkspaceDataSourceModule,
     ObjectMetadataRepositoryModule.forFeature([
       TimelineActivityWorkspaceEntity,
     ]),
+    TwentyORMModule,
   ],
   providers: [TimelineActivityService],
   exports: [TimelineActivityService],