In this PR
1. fix workflow step creation by adding forgotten
`shouldBypassPermissionChecks` in WorkflowVersionStepWorkspaceService
2. clarify the rule for twentyORMGlobalManager: do not add unnecessary
`shouldBypassPermissionChecks` for system objects (there are no
object-records permission checks on system objects, they are dealt with
at resolver level)
# Indexes
### TLDR:
Putting indexes back, except relation ones
### Details:
- Added index synchronization logic back (it was removed previously in
45d4845b26)
in the sync-metadata service.
- for unique inedexes, a command will create unicity again by handling
duplicates that were cretated since the
45d4845b26
was triggered
