UI styling update
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@ -9,11 +9,19 @@ const ATACIntroduction = () => {
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"The sequenced fragments are analysed using advanced bioinformatics tools to characterize the regulatory landscape, including chromatin accessibility, nucleosome mapping, and transcription factor binding.",
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"Assist in numerous applications like biomarker discovery, identification of novel enhancer, analysis of cell-type specific regulation, evolutionary studies and comparative epigenomic studies."
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];
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const advantageItems = [
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"ATAC-seq has become the method of choice for studying chromatin accessibility due to its efficiency and robust performance.",
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"Requires only 50,000 cells per sample, offering high sensitivity and making it ideal for studies with limited cell populations. This technique is versatile, applicable to both bulk tissue and single-cell analysis.",
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"Features simplified experimental steps, offering good reproducibility and a high success rate in generating reliable data.",
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"Simultaneously reveals the genomic locations of open chromatin, DNA-binding proteins, and transcription factor binding site interactions, providing a holistic view of chromatin accessibility."
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];
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return (
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<IntroductionLayout
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title="Introduction and Workflow"
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contentItems={contentItems}
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introTitle="Introduction and Workflow"
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advantageTitle="Advantage"
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introItems={contentItems}
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advantageItems={advantageItems}
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imageUrl="/images/dna/atac_sequencin.png"
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imageAlt="ATAC Workflow"
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badgeText="ATAC WORKFLOW"
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@ -24,8 +24,6 @@ export default function ATACSequencingPage() {
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<div className="page-content">
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<ATACIntroduction />
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<ATACAdvantages />
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<ATACBioinformatics />
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<ATACApplications />
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<ATACSpecifications />
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</div>
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@ -9,11 +9,19 @@ const ChIPIntroduction = () => {
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"Following this, NGS libraries are created by adding adapters and amplifying the DNA, which is subsequently sequenced on an Illumina platform.",
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"It provides valuable insights into gene regulation, revealing dysregulated pathways in cancers, developmental processes, and other biological phenomena."
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];
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const advantageItems = [
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"Offers detailed genome-wide mapping of protein-DNA interactions, identifying binding sites of transcription factors, regulators, and other DNA-associated proteins.",
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"Utilizes specific antibodies to precisely capture and sequence protein-DNA complexes, providing accurate reflections of in vivo binding events.",
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"Reveals critical insights into gene regulation and chromatin dynamics, aiding in the understanding of gene expression, regulatory mechanisms, and epigenetic modifications.",
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"Facilitates studies on gene regulation in various contexts, including developmental processes, cancer research, and other biological phenomena, enhancing our understanding of complex biological systems and diseases."
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];
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return (
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<IntroductionLayout
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title="Introduction and Workflow"
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contentItems={contentItems}
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introTitle="Introduction and Workflow"
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advantageTitle="Advantage"
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introItems={contentItems}
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advantageItems={advantageItems}
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imageUrl="/images/dna/ChIP-sequencing.png"
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imageAlt="ChIP Workflow"
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badgeText="ChIP WORKFLOW"
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@ -24,8 +24,6 @@ export default function ChIPSequencingPage() {
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<div className="page-content">
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<ChIPIntroduction />
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<ChIPAdvantages />
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<ChIPBioinformatics />
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<ChIPApplications />
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<ChIPSpecifications />
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</div>
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@ -9,6 +9,13 @@ const EpigenomicsIntroduction = () => {
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"In the bioinformatics analysis, these reads are aligned to a known reference genome to detect genomic alterations and epigenetic modifications.",
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"It is a powerful tool for diverse genomic studies, capable of sequencing humans, livestock, plants, bacteria, and disease-related microbes."
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];
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const advantageItems = [
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"Provides comprehensive analysis of epigenetic modifications including DNA methylation, histone modifications, and chromatin accessibility, offering insights into gene regulation mechanisms.",
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"Enables single-base resolution mapping of epigenetic marks across the genome, allowing for precise identification of regulatory elements and their modifications.",
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"Reveals epigenetic alterations associated with diseases, development, and environmental responses, providing insights into cellular memory and inheritance patterns.",
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"Identifies potential therapeutic targets and biomarkers for epigenetic-based treatments, supporting the development of personalized medicine approaches."
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];
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const serviceTypes = [
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"Whole Genome Bisulphite Sequencing (WGBS)",
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@ -18,8 +25,10 @@ const EpigenomicsIntroduction = () => {
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return (
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<IntroductionLayout
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title="Introduction and Workflow"
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contentItems={contentItems}
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introTitle="Introduction and Workflow"
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advantageTitle="Advantage"
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introItems={contentItems}
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advantageItems={advantageItems}
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imageUrl="/images/epigenomics-overview.png"
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imageAlt="Epigenomics Overview"
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badgeText="EPIGENOMICS"
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@ -5,16 +5,15 @@ const EpigenomicsPipeline = ({
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svgContent = null, // Pass your SVG content here as JSX
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svgUrl = "/images/flowchart/epigenomics.svg",
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backgroundColor = "bg-gray-50",
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textColor = "text-gray-700",
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className = "",
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titleClassName = "",
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svgClassName = "",
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containerClassName = ""
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}) => {
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return (
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<section className={`py-6 sm:py-8 lg:py-12 ${backgroundColor} ${className}`}>
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<section className={`py-6 sm:py-8 lg:py-4 ${backgroundColor} ${className}`}>
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<div className={`container mx-auto max-w-none px-3 sm:px-4 lg:px-6 ${containerClassName}`}>
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<h2 className={`${textColor} text-left pb-4 sm:pb-6 text-xl sm:text-2xl lg:text-3xl font-normal ${titleClassName}`}>
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<h2 className={"text-3xl font-bold text-teal-700 mb-4"}>
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{title}
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</h2>
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@ -22,19 +21,19 @@ const EpigenomicsPipeline = ({
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<div className="bg-white rounded-xl shadow-lg p-4 sm:p-6 lg:p-8">
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<div className="flex justify-center">
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<div className="w-full max-w-6xl">
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{/* SVG Container with responsive sizing */}
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<div className={`w-full ${svgClassName}`}>
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{/* SVG Container with responsive sizing and reduced height */}
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<div className={`w-full max-h-100 overflow-hidden ${svgClassName}`}>
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{svgUrl ? (
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// If SVG URL/path is provided
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<img
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src={svgUrl}
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alt="Flowchart diagram"
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className="w-full h-auto object-contain"
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className="w-full h-auto object-contain max-h-100"
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/>
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) : svgContent ? (
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// If SVG content is provided as JSX
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<div className="w-full">
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<div className="w-full">
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<div className="w-full max-h-100">
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<div className="w-full max-h-100 overflow-hidden">
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{svgContent}
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</div>
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</div>
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@ -23,7 +23,6 @@ export default function EpigenomicsSequencingPage() {
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<div className="page-content">
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<EpigenomicsIntroduction />
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<EpigenomicsPipeline/>
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<EpigenomicsAdvantages />
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<EpigenomicsSpecifications />
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</div>
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</PageLayout>
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@ -1,5 +1,5 @@
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// WGBSApplications.jsx
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import ApplicationsLayout from '../../../../components/shared/AdvantagesLayout';
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import ApplicationsLayout from '../../../../components/shared/ApplicationsLayout';
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const WGBSApplications = () => {
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const applicationItems = [
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@ -9,11 +9,20 @@ const WGBSIntroduction = () => {
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"In bioinformatics analysis, sequencing data is aligned to a reference genome using advanced bioinformatics tools to determine the methylation status at CpG, CHG, and CHH sites.",
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"Valuable in epigenetic research for its ability to provide high-resolution insights into the regulatory mechanisms of the genome, offering a deeper understanding of cellular functions and molecular pathways."
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];
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const advantageItems = [
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"Provides high-resolution mapping of DNA methylation patterns across the genome, including CpG, CHG, and CHH sites, offering detailed insights into epigenetic modifications.",
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"Enables precise quantification of methylation levels, distinguishing between methylated and unmethylated cytosines based on read counts.",
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"This technique can detect effective CpG sites reaching over 75% of all CpG sites in the entire genome.",
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"Provides valuable insights into cell fate determination, genetic reprogramming, gene regulation, developmental epigenetics, disease mechanisms, and the identification of new epigenetic markers and therapeutic targets."
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];
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return (
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<IntroductionLayout
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title="Introduction and Workflow"
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contentItems={contentItems}
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introTitle="Introduction and Workflow"
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advantageTitle="Advantage"
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introItems={contentItems}
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advantageItems={advantageItems}
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imageUrl="/images/dna/whole_genome_bisulphate_sequencing.png"
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imageAlt="WGBS Workflow"
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badgeText="WGBS WORKFLOW"
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@ -24,8 +24,6 @@ export default function WGBSPage() {
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<div className="page-content">
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<WGBSIntroduction />
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<WGBSAdvantages />
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<WGBSBioinformatics />
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<WGBSApplications />
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<WGBSSpecifications />
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</div>
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