Flowchart Updated
This commit is contained in:
mukesh13
@ -1,130 +1,49 @@
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import React from 'react';
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import { ArrowDown, ArrowRight, ArrowUp } from 'lucide-react';
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const CircularRNAPipeline = ({
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title = "Bioinformatics Pipeline",
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leftSteps = [
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"Raw Sequencing Data (fastq files)",
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"Quality Control and Preprocessing of Data",
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"High Quality Sequencing Data (fastq file)",
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"Alignment to Reference Genome"
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],
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rightSteps = [
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"Downstream Advanced Analysis",
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"Circular RNA Identification",
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"Circular RNA Prediction",
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"Back Splicing Junction Reads"
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],
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svgContent = null, // Pass your SVG content here as JSX
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svgUrl = "/images/flowchart/circularrna.svg",
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backgroundColor = "bg-gray-50",
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cardColor = "bg-gray-300",
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textColor = "text-teal-600",
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arrowColor = "text-gray-600",
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textColor = "text-gray-700",
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className = "",
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cardClassName = "",
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titleClassName = ""
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titleClassName = "",
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svgClassName = "",
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containerClassName = ""
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}) => {
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// Combine steps for mobile layout
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const mobileSteps = [...leftSteps, ...rightSteps.slice().reverse()];
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return (
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<section className={`py-6 sm:py-8 lg:py-12 ${backgroundColor} ${className}`}>
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<div className="container mx-auto max-w-none px-3 sm:px-4 lg:px-6">
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<h2 className={`text-gray-700 text-left pb-4 sm:pb-6 text-xl sm:text-2xl lg:text-3xl font-normal ${titleClassName}`}>
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<div className={`container mx-auto max-w-none px-3 sm:px-4 lg:px-6 ${containerClassName}`}>
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<h2 className={`${textColor} text-left pb-4 sm:pb-6 text-xl sm:text-2xl lg:text-3xl font-normal ${titleClassName}`}>
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{title}
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</h2>
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{/* Pipeline Flowchart */}
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{/* SVG Flowchart Container */}
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<div className="bg-white rounded-xl shadow-lg p-4 sm:p-6 lg:p-8">
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<div className="flex justify-center">
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<div className="w-full max-w-5xl">
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<div className="relative">
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{/* Mobile Layout - Single Column */}
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<div className="block sm:hidden">
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<div className="flex flex-col items-center space-y-3">
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{mobileSteps.map((step, index) => (
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<React.Fragment key={index}>
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<div className={`${cardColor} rounded-lg p-3 w-full text-center border ${cardClassName}`}>
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<h3 className={`text-xs font-medium ${textColor}`}>{step}</h3>
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</div>
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{index < mobileSteps.length - 1 && (
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<ArrowDown className={`w-5 h-5 ${arrowColor}`} />
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)}
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</React.Fragment>
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))}
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</div>
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</div>
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{/* Tablet and Desktop Layout - Two Columns */}
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<div className="hidden sm:block">
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<div className="grid grid-cols-2 gap-4 sm:gap-6 lg:gap-8">
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{/* Left Column */}
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<div className="flex flex-col items-center space-y-2 sm:space-y-3">
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{leftSteps.map((step, index) => (
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<React.Fragment key={index}>
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<div className={`${cardColor} rounded-lg p-3 sm:p-4 w-full max-w-80 text-center border ${cardClassName}`}>
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<h3 className={`text-xs sm:text-sm font-medium ${textColor}`}>{step}</h3>
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</div>
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{index < leftSteps.length - 1 && (
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<ArrowDown className={`w-5 h-5 sm:w-6 sm:h-6 ${arrowColor}`} />
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)}
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</React.Fragment>
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))}
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</div>
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{/* Right Column */}
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<div className="flex flex-col items-center space-y-2 sm:space-y-3">
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{rightSteps.map((step, index) => (
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<React.Fragment key={index}>
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<div className={`${cardColor} rounded-lg p-3 sm:p-4 w-full max-w-80 text-center border ${cardClassName}`}>
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<h3 className={`text-xs sm:text-sm font-medium ${textColor}`}>{step}</h3>
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</div>
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{index < rightSteps.length - 1 && (
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<ArrowUp className={`w-5 h-5 sm:w-6 sm:h-6 ${arrowColor}`} />
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)}
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</React.Fragment>
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))}
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<div className="w-full max-w-6xl">
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{/* SVG Container with responsive sizing */}
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<div className={`w-full ${svgClassName}`}>
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{svgUrl ? (
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// If SVG URL/path is provided
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<img
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src={svgUrl}
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alt="Flowchart diagram"
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className="w-full h-auto object-contain"
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/>
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) : svgContent ? (
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// If SVG content is provided as JSX
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<div className="w-full">
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<div className="w-full">
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{svgContent}
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</div>
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</div>
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{/* Custom arrows from "Alignment to Reference Genome" */}
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<div className="absolute bottom-12 sm:bottom-16 lg:bottom-[2rem] left-1/2 transform -translate-x-1/2">
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<div className="relative w-0 h-0">
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{/* Arrow 1: Straight horizontal to "Back Splicing Junction Reads" (Unmapped Reads) */}
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<div className="absolute top-0 left-0">
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<div className="relative">
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{/* Horizontal line */}
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<div className="w-16 sm:w-20 lg:w-28 h-0.5 bg-gray-600"></div>
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{/* Arrowhead */}
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<div className="absolute right-0 -top-1 w-2 h-2 border-r-2 border-t-2 border-gray-600 rotate-45"></div>
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{/* Label */}
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<div className="absolute top-2 left-4 sm:left-6 lg:left-10 text-xs text-gray-700 font-medium whitespace-nowrap">
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Unmapped Reads
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</div>
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</div>
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</div>
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{/* Arrow 2: Diagonal upward to "Circular RNA Prediction" (Mapped Reads) */}
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<div className="absolute top-0 left-0">
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<div className="relative">
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{/* Diagonal line going up and right */}
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<div className="absolute origin-left w-20 sm:w-24 lg:w-32 h-0.5 bg-gray-600 transform -rotate-45"></div>
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{/* Arrowhead positioned at the end of diagonal line */}
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<div className="absolute w-2 h-2 border-r-2 border-t-2 border-gray-600 transform rotate-0"
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style={{
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left: 'calc(20 * 0.25rem * 0.707 - 4px)', // cos(45deg) ≈ 0.707
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top: 'calc(-20 * 0.25rem * 0.707 - 4px)' // -sin(45deg) ≈ -0.707
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}}></div>
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{/* Label */}
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<div className="absolute -top-8 left-6 sm:left-8 lg:left-12 text-xs text-gray-700 font-medium whitespace-nowrap">
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Mapped Reads
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</div>
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</div>
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</div>
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</div>
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) : (
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// Fallback message
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<div className="flex items-center justify-center h-40 text-gray-500">
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<p>Please provide SVG content or URL</p>
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</div>
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</div>
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)}
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</div>
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</div>
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</div>
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@ -1,123 +1,49 @@
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import React from 'react';
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import { ArrowDown, ArrowRight, ArrowUp } from 'lucide-react';
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const DegradomeSequencingPipeline = ({
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title = "Degradome Sequencing",
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title = "Bioinformatics Pipeline",
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svgContent = null, // Pass your SVG content here as JSX
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svgUrl = "/images/flowchart/degradomerna.svg",
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backgroundColor = "bg-gray-50",
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cardColor = "bg-blue-200",
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textColor = "text-gray-800",
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arrowColor = "text-gray-600",
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textColor = "text-gray-700",
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className = "",
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cardClassName = "",
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titleClassName = ""
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titleClassName = "",
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svgClassName = "",
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containerClassName = ""
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}) => {
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const leftSteps = [
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"Raw Sequencing Data (fastq files)",
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"Quality Control and Preprocessing of Data",
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"High Quality Sequencing Data (fastq file)",
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"Alignment to Reference Genome"
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];
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const rightSteps = [
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"Related miRNA Identification",
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"mRNAs Degradome Sites",
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"Identify Target mRNAs",
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"Retain mRNA data Remove rRNA, tRNA and other RNA"
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];
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const middleSteps = [
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"Functional Analysis"
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];
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return (
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<section className={`py-6 sm:py-8 lg:py-12 ${backgroundColor} ${className}`}>
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<div className="container mx-auto max-w-none px-3 sm:px-4 lg:px-6">
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<h2 className={`text-gray-700 text-left pb-4 sm:pb-6 text-xl sm:text-2xl lg:text-3xl font-normal ${titleClassName}`}>
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<div className={`container mx-auto max-w-none px-3 sm:px-4 lg:px-6 ${containerClassName}`}>
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<h2 className={`${textColor} text-left pb-4 sm:pb-6 text-xl sm:text-2xl lg:text-3xl font-normal ${titleClassName}`}>
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{title}
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</h2>
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{/* Pipeline Flowchart */}
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{/* SVG Flowchart Container */}
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<div className="bg-white rounded-xl shadow-lg p-4 sm:p-6 lg:p-8">
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<div className="flex justify-center">
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<div className="w-full max-w-6xl">
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<div className="relative">
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{/* Mobile Layout - Single Column */}
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<div className="block lg:hidden">
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<div className="flex flex-col items-center space-y-3">
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{[...leftSteps, ...rightSteps.slice().reverse(), ...middleSteps].map((step, index) => (
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<React.Fragment key={index}>
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<div className={`${cardColor} rounded-lg p-3 w-full text-center border ${cardClassName}`}>
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<h3 className={`text-xs font-medium ${textColor}`}>{step}</h3>
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</div>
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{index < leftSteps.length + rightSteps.length + middleSteps.length - 1 && (
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<ArrowDown className={`w-5 h-5 ${arrowColor}`} />
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)}
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</React.Fragment>
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))}
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</div>
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</div>
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{/* Desktop Layout - Complex Flow */}
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<div className="hidden lg:block">
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<div className="grid grid-cols-3 gap-6 lg:gap-8">
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{/* Left Column */}
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<div className="flex flex-col items-center space-y-3">
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{leftSteps.map((step, index) => (
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<React.Fragment key={index}>
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<div className={`${cardColor} rounded-lg p-4 w-full max-w-80 text-center border ${cardClassName}`}>
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<h3 className={`text-sm font-medium ${textColor}`}>{step}</h3>
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</div>
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{index < leftSteps.length - 1 && (
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<ArrowDown className={`w-6 h-6 ${arrowColor}`} />
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)}
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</React.Fragment>
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))}
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</div>
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{/* Middle Column */}
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<div className="flex flex-col items-center justify-center space-y-3">
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{middleSteps.map((step, index) => (
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<div key={index} className={`${cardColor} rounded-lg p-4 w-full max-w-60 text-center border ${cardClassName}`}>
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<h3 className={`text-sm font-medium ${textColor}`}>{step}</h3>
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</div>
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))}
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</div>
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{/* Right Column */}
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<div className="flex flex-col items-center space-y-3">
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{rightSteps.map((step, index) => (
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<React.Fragment key={index}>
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<div className={`${cardColor} rounded-lg p-4 w-full max-w-80 text-center border ${cardClassName}`}>
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<h3 className={`text-sm font-medium ${textColor}`}>{step}</h3>
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</div>
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{index < rightSteps.length - 1 && (
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<ArrowUp className={`w-6 h-6 ${arrowColor}`} />
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)}
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</React.Fragment>
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))}
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{/* SVG Container with responsive sizing */}
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<div className={`w-full ${svgClassName}`}>
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{svgUrl ? (
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// If SVG URL/path is provided
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<img
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src={svgUrl}
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alt="Flowchart diagram"
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className="w-full h-auto object-contain"
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/>
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) : svgContent ? (
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// If SVG content is provided as JSX
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<div className="w-full">
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<div className="w-full">
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{svgContent}
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</div>
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</div>
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{/* Horizontal Arrow from left to right (after alignment) */}
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<div className="absolute bottom-4 left-1/3 transform -translate-x-1/2 flex items-center justify-center">
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<ArrowRight className={`w-8 h-8 ${arrowColor}`} />
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) : (
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// Fallback message
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<div className="flex items-center justify-center h-40 text-gray-500">
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<p>Please provide SVG content or URL</p>
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</div>
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{/* Bidirectional arrows between middle and right columns */}
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<div className="absolute top-1/2 right-1/3 transform translate-x-1/2 -translate-y-1/2 flex flex-col items-center space-y-2">
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<ArrowUp className={`w-6 h-6 ${arrowColor}`} />
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<ArrowDown className={`w-6 h-6 ${arrowColor}`} />
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</div>
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{/* Additional arrows for the circular flow in right column */}
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<div className="absolute top-1/4 right-6 flex items-center justify-center">
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<ArrowUp className={`w-5 h-5 ${arrowColor}`} />
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</div>
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<div className="absolute top-2/3 right-6 flex items-center justify-center">
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<ArrowUp className={`w-5 h-5 ${arrowColor}`} />
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</div>
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</div>
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)}
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</div>
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</div>
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</div>
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@ -1,127 +1,49 @@
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import React from 'react';
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import { ArrowDown, ArrowRight, ArrowUp } from 'lucide-react';
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const IsoformPipeline = ({
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title = "Bioinformatics Pipeline",
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leftSteps = [
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"Raw Sequencing Data (fastq files)",
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"Quality Control and Preprocessing of Data",
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"High Quality Sequencing Data (fastq file)",
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"Build Similarity Graph and Polishing"
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],
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rightSteps = [
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"Downstream Analysis (Fusion Analysis, Splicing Analysis)",
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"Transcript Annotation and Classification",
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"Sequencing Merge and Redundancy Removal",
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"Alignment to Reference Genome"
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],
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svgContent = null, // Pass your SVG content here as JSX
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svgUrl = "/images/flowchart/isoseqrna.svg",
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backgroundColor = "bg-gray-50",
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cardColor = "bg-gray-300",
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textColor = "text-teal-600",
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arrowColor = "text-gray-600",
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textColor = "text-gray-700",
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className = "",
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cardClassName = "",
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titleClassName = ""
|
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titleClassName = "",
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svgClassName = "",
|
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containerClassName = ""
|
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}) => {
|
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// Combine steps for mobile layout
|
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const mobileSteps = [...leftSteps, ...rightSteps.slice().reverse()];
|
||||
|
||||
return (
|
||||
<section className={`py-6 sm:py-8 lg:py-12 ${backgroundColor} ${className}`}>
|
||||
<div className="container mx-auto max-w-none px-3 sm:px-4 lg:px-6">
|
||||
<h2 className={`text-gray-700 text-left pb-4 sm:pb-6 text-xl sm:text-2xl lg:text-3xl font-normal ${titleClassName}`}>
|
||||
<div className={`container mx-auto max-w-none px-3 sm:px-4 lg:px-6 ${containerClassName}`}>
|
||||
<h2 className={`${textColor} text-left pb-4 sm:pb-6 text-xl sm:text-2xl lg:text-3xl font-normal ${titleClassName}`}>
|
||||
{title}
|
||||
</h2>
|
||||
|
||||
{/* Pipeline Flowchart */}
|
||||
{/* SVG Flowchart Container */}
|
||||
<div className="bg-white rounded-xl shadow-lg p-4 sm:p-6 lg:p-8">
|
||||
<div className="flex justify-center">
|
||||
<div className="w-full max-w-5xl">
|
||||
<div className="relative">
|
||||
{/* Mobile Layout - Single Column */}
|
||||
<div className="block sm:hidden">
|
||||
<div className="flex flex-col items-center space-y-3">
|
||||
{mobileSteps.map((step, index) => (
|
||||
<React.Fragment key={index}>
|
||||
<div className={`${cardColor} rounded-lg p-3 w-full text-center border ${cardClassName}`}>
|
||||
<h3 className={`text-xs font-medium ${textColor}`}>{step}</h3>
|
||||
</div>
|
||||
{index < mobileSteps.length - 1 && (
|
||||
<ArrowDown className={`w-5 h-5 ${arrowColor}`} />
|
||||
)}
|
||||
</React.Fragment>
|
||||
))}
|
||||
</div>
|
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</div>
|
||||
|
||||
{/* Desktop Layout - Two Columns */}
|
||||
<div className="hidden sm:block">
|
||||
<div className="grid grid-cols-2 gap-4 sm:gap-6 lg:gap-8">
|
||||
{/* Left Column */}
|
||||
<div className="flex flex-col items-center space-y-3">
|
||||
{leftSteps.map((step, index) => (
|
||||
<React.Fragment key={index}>
|
||||
<div className={`${cardColor} rounded-lg p-4 w-full text-center border ${cardClassName}`} style={{maxWidth: '19rem'}}>
|
||||
<h3 className={`text-sm font-medium ${textColor}`}>{step}</h3>
|
||||
</div>
|
||||
{index < leftSteps.length - 1 && (
|
||||
<ArrowDown className={`w-6 h-6 ${arrowColor}`} />
|
||||
)}
|
||||
</React.Fragment>
|
||||
))}
|
||||
</div>
|
||||
|
||||
{/* Right Column */}
|
||||
<div className="flex flex-col items-center space-y-3">
|
||||
{rightSteps.map((step, index) => (
|
||||
<React.Fragment key={index}>
|
||||
<div className={`${cardColor} rounded-lg p-4 w-full text-center border ${cardClassName}`} style={{maxWidth: '19rem'}}>
|
||||
<h3 className={`text-sm font-medium ${textColor}`}>{step}</h3>
|
||||
</div>
|
||||
{index < rightSteps.length - 1 && (
|
||||
<ArrowUp className={`w-6 h-6 ${arrowColor}`} />
|
||||
)}
|
||||
</React.Fragment>
|
||||
))}
|
||||
<div className="w-full max-w-6xl">
|
||||
{/* SVG Container with responsive sizing */}
|
||||
<div className={`w-full ${svgClassName}`}>
|
||||
{svgUrl ? (
|
||||
// If SVG URL/path is provided
|
||||
<img
|
||||
src={svgUrl}
|
||||
alt="Flowchart diagram"
|
||||
className="w-full h-auto object-contain"
|
||||
/>
|
||||
) : svgContent ? (
|
||||
// If SVG content is provided as JSX
|
||||
<div className="w-full">
|
||||
<div className="w-full">
|
||||
{svgContent}
|
||||
</div>
|
||||
</div>
|
||||
|
||||
{/* Diagonal Arrow from High Quality Sequencing Data to Alignment to Reference Genome */}
|
||||
<div className="absolute top-80 left-1/2 transform -translate-x-1/2 -translate-y-1/2">
|
||||
<svg
|
||||
width="180"
|
||||
height="60"
|
||||
viewBox="0 0 180 60"
|
||||
className={arrowColor}
|
||||
style={{transform: 'rotate(20deg)'}}
|
||||
>
|
||||
<defs>
|
||||
<marker
|
||||
id="arrowhead"
|
||||
markerWidth="10"
|
||||
markerHeight="7"
|
||||
refX="9"
|
||||
refY="3.5"
|
||||
orient="auto"
|
||||
>
|
||||
<polygon
|
||||
points="0 0, 10 3.5, 0 7"
|
||||
fill="currentColor"
|
||||
/>
|
||||
</marker>
|
||||
</defs>
|
||||
<line
|
||||
x1="10"
|
||||
y1="10"
|
||||
x2="170"
|
||||
y2="50"
|
||||
stroke="currentColor"
|
||||
strokeWidth="2"
|
||||
markerEnd="url(#arrowhead)"
|
||||
/>
|
||||
</svg>
|
||||
) : (
|
||||
// Fallback message
|
||||
<div className="flex items-center justify-center h-40 text-gray-500">
|
||||
<p>Please provide SVG content or URL</p>
|
||||
</div>
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
@ -1,28 +1,51 @@
|
||||
// app/rna-sequencing/lncrna-sequencing/components/LncRNABioinformatics.jsx
|
||||
import React from 'react';
|
||||
|
||||
const LncRNABioinformatics = () => {
|
||||
const LncRNABioinformatics = ({
|
||||
title = "Bioinformatics Pipeline",
|
||||
svgContent = null, // Pass your SVG content here as JSX
|
||||
svgUrl = "/images/flowchart/totalrna.svg",
|
||||
backgroundColor = "bg-gray-50",
|
||||
textColor = "text-gray-700",
|
||||
className = "",
|
||||
titleClassName = "",
|
||||
svgClassName = "",
|
||||
containerClassName = ""
|
||||
}) => {
|
||||
return (
|
||||
<section className="py-8 lg:py-12 bg-gray-50">
|
||||
<div className="container mx-auto max-w-none px-4 lg:px-6">
|
||||
<h2 className="text-2xl lg:text-3xl text-gray-700 text-left pb-2 mb-6 lg:mb-6">
|
||||
Bioinformatics Pipeline
|
||||
<section className={`py-6 sm:py-8 lg:py-12 ${backgroundColor} ${className}`}>
|
||||
<div className={`container mx-auto max-w-none px-3 sm:px-4 lg:px-6 ${containerClassName}`}>
|
||||
<h2 className={`${textColor} text-left pb-4 sm:pb-6 text-xl sm:text-2xl lg:text-3xl font-normal ${titleClassName}`}>
|
||||
{title}
|
||||
</h2>
|
||||
|
||||
{/* Pipeline Image */}
|
||||
<div className="bg-white rounded-xl shadow-lg p-6 lg:p-8">
|
||||
|
||||
{/* SVG Flowchart Container */}
|
||||
<div className="bg-white rounded-xl shadow-lg p-4 sm:p-6 lg:p-8">
|
||||
<div className="flex justify-center">
|
||||
<img
|
||||
src="/images/lncrna-bioinformatics-pipeline.jpg"
|
||||
alt="lncRNA Sequencing Bioinformatics Pipeline Workflow"
|
||||
className="max-w-full h-auto rounded-lg"
|
||||
/>
|
||||
</div>
|
||||
|
||||
{/* Pipeline Description */}
|
||||
<div className="mt-6 text-center">
|
||||
<p className="text-gray-600 text-sm lg:text-base">
|
||||
lncRNA sequencing bioinformatics pipeline for long non-coding RNA analysis and expression profiling
|
||||
</p>
|
||||
<div className="w-full max-w-6xl">
|
||||
{/* SVG Container with responsive sizing */}
|
||||
<div className={`w-full ${svgClassName}`}>
|
||||
{svgUrl ? (
|
||||
// If SVG URL/path is provided
|
||||
<img
|
||||
src={svgUrl}
|
||||
alt="Flowchart diagram"
|
||||
className="w-full h-auto object-contain"
|
||||
/>
|
||||
) : svgContent ? (
|
||||
// If SVG content is provided as JSX
|
||||
<div className="w-full">
|
||||
<div className="w-full">
|
||||
{svgContent}
|
||||
</div>
|
||||
</div>
|
||||
) : (
|
||||
// Fallback message
|
||||
<div className="flex items-center justify-center h-40 text-gray-500">
|
||||
<p>Please provide SVG content or URL</p>
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
@ -30,4 +53,4 @@ const LncRNABioinformatics = () => {
|
||||
);
|
||||
};
|
||||
|
||||
export default LncRNABioinformatics
|
||||
export default LncRNABioinformatics;
|
||||
@ -1,188 +1,49 @@
|
||||
import React from 'react';
|
||||
import { ArrowDown, ArrowRight, ArrowUp } from 'lucide-react';
|
||||
|
||||
const MetatranscriptomicsPipeline = ({
|
||||
title = "Metatranscriptomics",
|
||||
title = "Bioinformatics Pipeline",
|
||||
svgContent = null, // Pass your SVG content here as JSX
|
||||
svgUrl = "/images/flowchart/metatranscriptomicsrna.svg",
|
||||
backgroundColor = "bg-gray-50",
|
||||
cardColor = "bg-blue-200",
|
||||
textColor = "text-blue-800",
|
||||
arrowColor = "text-gray-600",
|
||||
textColor = "text-gray-700",
|
||||
className = "",
|
||||
cardClassName = "",
|
||||
titleClassName = ""
|
||||
titleClassName = "",
|
||||
svgClassName = "",
|
||||
containerClassName = ""
|
||||
}) => {
|
||||
const topSteps = [
|
||||
"Raw Sequencing Data (fastq files)",
|
||||
"Quality Control",
|
||||
"High Quality Sequencing Data (fastq file)",
|
||||
"Retain mRNA reads and remove rRNA Reads"
|
||||
];
|
||||
|
||||
const bottomLeftSteps = [
|
||||
"Reference Genome Alignment",
|
||||
"Gene Expression Analysis",
|
||||
"Differential Analysis"
|
||||
];
|
||||
|
||||
const bottomCenterSteps = [
|
||||
"Transcript Assembly",
|
||||
"Structural Identification",
|
||||
"SNPs, SSRs Analysis eQTLs Analysis"
|
||||
];
|
||||
|
||||
const bottomRightSteps = [
|
||||
"Functional Annotation",
|
||||
"Statistical Analysis"
|
||||
];
|
||||
|
||||
return (
|
||||
<section className={`py-6 sm:py-8 lg:py-12 ${backgroundColor} ${className}`}>
|
||||
<div className="container mx-auto max-w-none px-3 sm:px-4 lg:px-6">
|
||||
<h2 className={`text-gray-700 text-left pb-4 sm:pb-6 text-xl sm:text-2xl lg:text-3xl font-normal ${titleClassName}`}>
|
||||
<div className={`container mx-auto max-w-none px-3 sm:px-4 lg:px-6 ${containerClassName}`}>
|
||||
<h2 className={`${textColor} text-left pb-4 sm:pb-6 text-xl sm:text-2xl lg:text-3xl font-normal ${titleClassName}`}>
|
||||
{title}
|
||||
</h2>
|
||||
|
||||
{/* Pipeline Flowchart */}
|
||||
{/* SVG Flowchart Container */}
|
||||
<div className="bg-white rounded-xl shadow-lg p-4 sm:p-6 lg:p-8">
|
||||
<div className="flex justify-center">
|
||||
<div className="w-full max-w-6xl">
|
||||
<div className="relative">
|
||||
{/* Mobile Layout - Single Column */}
|
||||
<div className="block lg:hidden">
|
||||
<div className="flex flex-col items-center space-y-3">
|
||||
{topSteps.map((step, index) => (
|
||||
<React.Fragment key={index}>
|
||||
<div className={`${cardColor} rounded-lg p-3 w-full text-center border ${cardClassName}`}>
|
||||
<h3 className={`text-xs font-medium ${textColor}`}>{step}</h3>
|
||||
</div>
|
||||
{index < topSteps.length - 1 && (
|
||||
<ArrowDown className={`w-5 h-5 ${arrowColor}`} />
|
||||
)}
|
||||
</React.Fragment>
|
||||
))}
|
||||
|
||||
{/* Bottom sections for mobile */}
|
||||
<div className="grid grid-cols-1 gap-4 w-full mt-6">
|
||||
{bottomLeftSteps.map((step, index) => (
|
||||
<React.Fragment key={index}>
|
||||
<div className={`${cardColor} rounded-lg p-3 w-full text-center border ${cardClassName}`}>
|
||||
<h3 className={`text-xs font-medium ${textColor}`}>{step}</h3>
|
||||
</div>
|
||||
{index < bottomLeftSteps.length - 1 && (
|
||||
<ArrowDown className={`w-5 h-5 ${arrowColor} mx-auto`} />
|
||||
)}
|
||||
</React.Fragment>
|
||||
))}
|
||||
|
||||
{bottomCenterSteps.map((step, index) => (
|
||||
<React.Fragment key={index}>
|
||||
<div className={`${cardColor} rounded-lg p-3 w-full text-center border ${cardClassName}`}>
|
||||
<h3 className={`text-xs font-medium ${textColor}`}>{step}</h3>
|
||||
</div>
|
||||
{index < bottomCenterSteps.length - 1 && (
|
||||
<ArrowDown className={`w-5 h-5 ${arrowColor} mx-auto`} />
|
||||
)}
|
||||
</React.Fragment>
|
||||
))}
|
||||
|
||||
{bottomRightSteps.map((step, index) => (
|
||||
<React.Fragment key={index}>
|
||||
<div className={`${cardColor} rounded-lg p-3 w-full text-center border ${cardClassName}`}>
|
||||
<h3 className={`text-xs font-medium ${textColor}`}>{step}</h3>
|
||||
</div>
|
||||
{index < bottomRightSteps.length - 1 && (
|
||||
<ArrowDown className={`w-5 h-5 ${arrowColor} mx-auto`} />
|
||||
)}
|
||||
</React.Fragment>
|
||||
))}
|
||||
{/* SVG Container with responsive sizing */}
|
||||
<div className={`w-full ${svgClassName}`}>
|
||||
{svgUrl ? (
|
||||
// If SVG URL/path is provided
|
||||
<img
|
||||
src={svgUrl}
|
||||
alt="Flowchart diagram"
|
||||
className="w-full h-auto object-contain"
|
||||
/>
|
||||
) : svgContent ? (
|
||||
// If SVG content is provided as JSX
|
||||
<div className="w-full">
|
||||
<div className="w-full">
|
||||
{svgContent}
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
{/* Desktop Layout */}
|
||||
<div className="hidden lg:block">
|
||||
{/* Top vertical sequence */}
|
||||
<div className="flex flex-col items-center space-y-4 mb-8">
|
||||
{topSteps.map((step, index) => (
|
||||
<React.Fragment key={index}>
|
||||
<div className={`${cardColor} rounded-lg p-4 w-96 text-center border ${cardClassName}`}>
|
||||
<h3 className={`text-sm font-medium ${textColor}`}>{step}</h3>
|
||||
</div>
|
||||
{index < topSteps.length - 1 && (
|
||||
<ArrowDown className={`w-6 h-6 ${arrowColor}`} />
|
||||
)}
|
||||
</React.Fragment>
|
||||
))}
|
||||
) : (
|
||||
// Fallback message
|
||||
<div className="flex items-center justify-center h-40 text-gray-500">
|
||||
<p>Please provide SVG content or URL</p>
|
||||
</div>
|
||||
|
||||
{/* Branching arrows from "Retain mRNA reads and remove rRNA Reads" */}
|
||||
<div className="flex justify-center mb-8">
|
||||
<div className="relative">
|
||||
{/* Left branch arrow */}
|
||||
<div className="absolute -left-32 top-0">
|
||||
<ArrowDown className={`w-6 h-6 ${arrowColor}`} />
|
||||
</div>
|
||||
|
||||
{/* Right branch arrow */}
|
||||
<div className="absolute left-32 top-0">
|
||||
<ArrowDown className={`w-6 h-6 ${arrowColor}`} />
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
{/* Bottom three columns */}
|
||||
<div className="grid grid-cols-3 gap-8">
|
||||
{/* Left Column */}
|
||||
<div className="flex flex-col items-center space-y-4">
|
||||
{bottomLeftSteps.map((step, index) => (
|
||||
<React.Fragment key={index}>
|
||||
<div className={`${cardColor} rounded-lg p-4 w-full text-center border ${cardClassName}`}>
|
||||
<h3 className={`text-sm font-medium ${textColor}`}>{step}</h3>
|
||||
</div>
|
||||
{index < bottomLeftSteps.length - 1 && (
|
||||
<ArrowDown className={`w-6 h-6 ${arrowColor}`} />
|
||||
)}
|
||||
</React.Fragment>
|
||||
))}
|
||||
</div>
|
||||
|
||||
{/* Center Column */}
|
||||
<div className="flex flex-col items-center space-y-4">
|
||||
{bottomCenterSteps.map((step, index) => (
|
||||
<React.Fragment key={index}>
|
||||
<div className={`${cardColor} rounded-lg p-4 w-full text-center border ${cardClassName}`}>
|
||||
<h3 className={`text-sm font-medium ${textColor}`}>{step}</h3>
|
||||
</div>
|
||||
{index < bottomCenterSteps.length - 1 && (
|
||||
<ArrowDown className={`w-6 h-6 ${arrowColor}`} />
|
||||
)}
|
||||
</React.Fragment>
|
||||
))}
|
||||
</div>
|
||||
|
||||
{/* Right Column */}
|
||||
<div className="flex flex-col items-center space-y-4">
|
||||
{bottomRightSteps.map((step, index) => (
|
||||
<React.Fragment key={index}>
|
||||
<div className={`${cardColor} rounded-lg p-4 w-full text-center border ${cardClassName}`}>
|
||||
<h3 className={`text-sm font-medium ${textColor}`}>{step}</h3>
|
||||
</div>
|
||||
{index < bottomRightSteps.length - 1 && (
|
||||
<ArrowDown className={`w-6 h-6 ${arrowColor}`} />
|
||||
)}
|
||||
</React.Fragment>
|
||||
))}
|
||||
</div>
|
||||
</div>
|
||||
|
||||
{/* Horizontal arrows connecting bottom sections */}
|
||||
<div className="absolute bottom-4 left-1/3 transform -translate-x-1/2">
|
||||
<ArrowRight className={`w-6 h-6 ${arrowColor}`} />
|
||||
</div>
|
||||
<div className="absolute bottom-4 right-1/3 transform translate-x-1/2">
|
||||
<ArrowRight className={`w-6 h-6 ${arrowColor}`} />
|
||||
</div>
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
@ -1,98 +1,49 @@
|
||||
import React from 'react';
|
||||
import { ArrowDown, ArrowRight, ArrowUp } from 'lucide-react';
|
||||
|
||||
const SRNABioinformatics = ({
|
||||
title = "Bioinformatics Pipeline",
|
||||
leftSteps = [
|
||||
"Raw Sequencing Data (fastq files)",
|
||||
"Quality Control and Preprocessing of Data",
|
||||
"High Quality Sequencing Data (fastq file)",
|
||||
"Blast Against mRNA, Rfam and RepBase",
|
||||
"Retained data with no annotation and remove data annotated with mRNA, Rfam and RepBase"
|
||||
],
|
||||
rightSteps = [
|
||||
"Downstream Advanced Analysis",
|
||||
"Identification of known and Novel microRNA",
|
||||
"Hairpin Prediction",
|
||||
"Aligned to Genome",
|
||||
"Aligned to Genome"
|
||||
],
|
||||
svgContent = null, // Pass your SVG content here as JSX
|
||||
svgUrl = "/images/flowchart/smallrna.svg",
|
||||
backgroundColor = "bg-gray-50",
|
||||
cardColor = "bg-gray-300",
|
||||
textColor = "text-teal-600",
|
||||
arrowColor = "text-gray-600",
|
||||
textColor = "text-gray-700",
|
||||
className = "",
|
||||
cardClassName = "",
|
||||
titleClassName = ""
|
||||
titleClassName = "",
|
||||
svgClassName = "",
|
||||
containerClassName = ""
|
||||
}) => {
|
||||
// Combine steps for mobile layout
|
||||
const mobileSteps = [...leftSteps, ...rightSteps.slice().reverse()];
|
||||
|
||||
return (
|
||||
<section className={`py-6 sm:py-8 lg:py-12 ${backgroundColor} ${className}`}>
|
||||
<div className="container mx-auto max-w-none px-3 sm:px-4 lg:px-6">
|
||||
<h2 className={`text-gray-700 text-left pb-4 sm:pb-6 text-xl sm:text-2xl lg:text-3xl font-normal ${titleClassName}`}>
|
||||
<div className={`container mx-auto max-w-none px-3 sm:px-4 lg:px-6 ${containerClassName}`}>
|
||||
<h2 className={`${textColor} text-left pb-4 sm:pb-6 text-xl sm:text-2xl lg:text-3xl font-normal ${titleClassName}`}>
|
||||
{title}
|
||||
</h2>
|
||||
|
||||
{/* Pipeline Flowchart */}
|
||||
{/* SVG Flowchart Container */}
|
||||
<div className="bg-white rounded-xl shadow-lg p-4 sm:p-6 lg:p-8">
|
||||
<div className="flex justify-center">
|
||||
<div className="w-full max-w-5xl">
|
||||
<div className="relative">
|
||||
{/* Mobile Layout - Single Column */}
|
||||
<div className="block sm:hidden">
|
||||
<div className="flex flex-col items-center space-y-3">
|
||||
{mobileSteps.map((step, index) => (
|
||||
<React.Fragment key={index}>
|
||||
<div className={`${cardColor} rounded-lg p-3 w-full text-center border ${cardClassName}`}>
|
||||
<h3 className={`text-xs font-medium ${textColor}`}>{step}</h3>
|
||||
</div>
|
||||
{index < mobileSteps.length - 1 && (
|
||||
<ArrowDown className={`w-5 h-5 ${arrowColor}`} />
|
||||
)}
|
||||
</React.Fragment>
|
||||
))}
|
||||
</div>
|
||||
</div>
|
||||
|
||||
{/* Desktop Layout - Two Columns */}
|
||||
<div className="hidden sm:block">
|
||||
<div className="grid grid-cols-2 gap-4 sm:gap-6 lg:gap-8">
|
||||
{/* Left Column */}
|
||||
<div className="flex flex-col items-center space-y-3">
|
||||
{leftSteps.map((step, index) => (
|
||||
<React.Fragment key={index}>
|
||||
<div className={`${cardColor} rounded-lg p-4 w-full text-center border ${cardClassName}`} style={{maxWidth: '19rem'}}>
|
||||
<h3 className={`text-sm font-medium ${textColor}`}>{step}</h3>
|
||||
</div>
|
||||
{index < leftSteps.length - 1 && (
|
||||
<ArrowDown className={`w-6 h-6 ${arrowColor}`} />
|
||||
)}
|
||||
</React.Fragment>
|
||||
))}
|
||||
</div>
|
||||
|
||||
{/* Right Column */}
|
||||
<div className="flex flex-col items-center space-y-3">
|
||||
{rightSteps.map((step, index) => (
|
||||
<React.Fragment key={index}>
|
||||
<div className={`${cardColor} rounded-lg p-4 w-full text-center border ${cardClassName}`} style={{maxWidth: '19rem'}}>
|
||||
<h3 className={`text-sm font-medium ${textColor}`}>{step}</h3>
|
||||
</div>
|
||||
{index < rightSteps.length - 1 && (
|
||||
<ArrowUp className={`w-6 h-6 ${arrowColor}`} />
|
||||
)}
|
||||
</React.Fragment>
|
||||
))}
|
||||
<div className="w-full max-w-6xl">
|
||||
{/* SVG Container with responsive sizing */}
|
||||
<div className={`w-full ${svgClassName}`}>
|
||||
{svgUrl ? (
|
||||
// If SVG URL/path is provided
|
||||
<img
|
||||
src={svgUrl}
|
||||
alt="Flowchart diagram"
|
||||
className="w-full h-auto object-contain"
|
||||
/>
|
||||
) : svgContent ? (
|
||||
// If SVG content is provided as JSX
|
||||
<div className="w-full">
|
||||
<div className="w-full">
|
||||
{svgContent}
|
||||
</div>
|
||||
</div>
|
||||
|
||||
{/* Horizontal Arrow from Transcript Assembly to Transcript Assembly Validation */}
|
||||
<div className="absolute bottom-4 left-1/2 transform -translate-x-1/2 flex items-center justify-center">
|
||||
<ArrowRight className={`w-8 h-8 ${arrowColor}`} />
|
||||
) : (
|
||||
// Fallback message
|
||||
<div className="flex items-center justify-center h-40 text-gray-500">
|
||||
<p>Please provide SVG content or URL</p>
|
||||
</div>
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
@ -0,0 +1,56 @@
|
||||
import React from 'react';
|
||||
|
||||
const WTSPipeline = ({
|
||||
title = "Bioinformatics Pipeline",
|
||||
svgContent = null, // Pass your SVG content here as JSX
|
||||
svgUrl = "/images/flowchart/totalrna.svg",
|
||||
backgroundColor = "bg-gray-50",
|
||||
textColor = "text-gray-700",
|
||||
className = "",
|
||||
titleClassName = "",
|
||||
svgClassName = "",
|
||||
containerClassName = ""
|
||||
}) => {
|
||||
return (
|
||||
<section className={`py-6 sm:py-8 lg:py-12 ${backgroundColor} ${className}`}>
|
||||
<div className={`container mx-auto max-w-none px-3 sm:px-4 lg:px-6 ${containerClassName}`}>
|
||||
<h2 className={`${textColor} text-left pb-4 sm:pb-6 text-xl sm:text-2xl lg:text-3xl font-normal ${titleClassName}`}>
|
||||
{title}
|
||||
</h2>
|
||||
|
||||
{/* SVG Flowchart Container */}
|
||||
<div className="bg-white rounded-xl shadow-lg p-4 sm:p-6 lg:p-8">
|
||||
<div className="flex justify-center">
|
||||
<div className="w-full max-w-6xl">
|
||||
{/* SVG Container with responsive sizing */}
|
||||
<div className={`w-full ${svgClassName}`}>
|
||||
{svgUrl ? (
|
||||
// If SVG URL/path is provided
|
||||
<img
|
||||
src={svgUrl}
|
||||
alt="Flowchart diagram"
|
||||
className="w-full h-auto object-contain"
|
||||
/>
|
||||
) : svgContent ? (
|
||||
// If SVG content is provided as JSX
|
||||
<div className="w-full">
|
||||
<div className="w-full">
|
||||
{svgContent}
|
||||
</div>
|
||||
</div>
|
||||
) : (
|
||||
// Fallback message
|
||||
<div className="flex items-center justify-center h-40 text-gray-500">
|
||||
<p>Please provide SVG content or URL</p>
|
||||
</div>
|
||||
)}
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</section>
|
||||
);
|
||||
};
|
||||
|
||||
export default WTSPipeline;
|
||||
@ -2,6 +2,7 @@
|
||||
import TitleBar from '../../components/shared/TitleBar';
|
||||
import WTSIntroduction from './components/WTSIntroduction';
|
||||
import WTSAdvantages from './components/WTSAdvantages';
|
||||
import WTSPipeline from './components/WTSPipeline';
|
||||
import WTSApplications from './components/WTSApplications';
|
||||
import WTSSpecifications from './components/WTSSpecifications';
|
||||
import PageLayout from '../../components/Layout/PageLayout';
|
||||
@ -21,6 +22,7 @@ export default function WholeTranscriptomeSequencingPage() {
|
||||
/>
|
||||
<WTSIntroduction />
|
||||
<WTSAdvantages />
|
||||
<WTSPipeline/>
|
||||
<WTSApplications />
|
||||
<WTSSpecifications />
|
||||
</PageLayout>
|
||||
|
||||
Reference in New Issue
Block a user